Therefore, the parallelization of clustering algorithms is inevitable, and various parallel clustering algorithms have been implemented and applied to many applications. There are approximate algorithms for making spectral. Overall flowchart for parallel implementation of power iteration clustering algorithm. Pic provides an effective clustering indicator and outperform on real datasets with low dimensional data. Hierarchical clustering, has become increasingly popular in recent years as an effective strategy for tackling large scale data clustering problems. A parallel clustering algorithm for power big data. Clusters are currently both the most popular and the most varied approach, ranging from a conventional network of workstations now to essentially custom parallel machines that just happen to use linux pcs as processor nodes. Lin 3 develop power iteration method which uses matrix vector multiplication but still it is not good for large dataset and there was a memory issue. This paper proposes a parallel implement of kmeans clustering algorithm based on hadoop distributed file system and mapreduce distributed computing framework to deal this problem. A single source program includes host codes running on cpu. The drawbacks of the parallel computing architecture like fault tolerance, node. For large data support more than 2 billion number of data points, see this page for an mpi implementation that uses 8byte integers. Oison computer science department, comell university, ithaca, ny 14853, usa received 28 december 1993.
The values generated from storing and processing of big data cannot be analyzed using traditional computing techniques. If the similarity matrix is an rbf kernel matrix, spectral clustering is expensive. More details and an illustration are provided in the architecture section below. Parallel kmeans data clustering northwestern university. Numerous new clustering algorithms have been introduced as a means to address these issues, for example densitybased methods e. One popular modern clustering algorithm is power iteration clustering5. Iterative clustering of high dimensional text data augmented. There are approximate algorithms for making spectral clustering more efficient. In addition, our parallel initialization gives an additional 1. Clustering of computers enables scalable parallel and distributed computing in both science and business applications. It computes a pseudoeigenvector of the normalized affinity matrix of the graph via power iteration and uses it to cluster vertices. It is an important tool for many fields including data mining, statistical data. Unit gpu accelerated algorithm for power iteration clustering pic.
Keywords clustering methods, hardware design, kmeans, parallel architectures, hardware folding i. The cluster consists of 16 nodes, and in each node, there are 1 quad core intel xeon processor and 8 gb memory. Inflated power iteration clustering algorithm to optimize. Apr 21, 2016 power iteration clustering algorithm pic replaces the eigen values with pseudo eigen vector. Learn more about parfor, cluster, submat, matlab 2014a parallel computing toolbox. The main steps of power iteration clustering algorithm are described in fig 2.
Networkit is distributed as a python package, ready to use interactively from a python shell, which is the. Each cluster aims to consist of objects with similar features. This embedding turns out to be an effective cluster indicator, consistently outperforming widely used spectral methods such as ncut on real datasets. It performs clustering by embedding data points in a lowdimensional subspace derived from the similarity matrix. Parallel algorithms for hierarchical clustering sciencedirect. Connecting two or more power supplies in parallel figure 1 provides higher currents. So parallel power iteration clustering was developed and due to its parallel implementation it reduces the memory storage. Hierarchical clustering offers several advantages over other clustering algorithms in that the number of clusters does not need to be specified in advance and the structure of the resulting dendrogram can offer insight into the larger structure of the data, e. Clustering result and the embedding provided by vt for the 3circles dataset. Pic takes an undirected graph with similarities defined on edges and outputs clustering assignment on nodes. Pic conversation 89 commits 31 checks 0 files changed.
Calculate the similarity matrix of the given graph. How to effectively cope with the power network data is becoming a hot topic. Bowden wise computer scientist, software systems lab. Power iteration clustering a 3circles pic result b t 50, scale 0. Finally, some power law graphs also display the smallworld phenomenon, for example, the social network formed by individuals. Power iteration is a very simple algorithm, but it may converge slowly. The p pic algorithm starts by the master processor determining the starting and ending indices for the corresponding data chunk for each processor and broadcasting the. Plots b through d are rescaled so the largest value is always at the. In presenting pic, we make connections to and make. Cohen presentedby minhuachen outline power iteration method spectral clustering power iteration clustering result spectralclustering 1 given the data matrix x x1,x2,xnp. So parallel power iteration clustering was developed and due to its parallel implementation it. Power iteration clustering is a scalable and efficient algorithm for clustering points given pointwise. Therefore, the applications of parallel clustering algorithms and the clustering.
Additional project details registered 20121028 report inappropriate content. School of computer science, carnegie mellon university. Implementation of p pic algorithm in map reduce to. The parallelism concept of mapreduce comes into picture. Power iteration clustering is fast, efficient and scalable. A parallel implementation using openmp and c a parallel implementation using mpi and c a sequential version in c. There is also a recent work on parallel kmeans by kantabutra and couch kc99. A starting point for applying clustering algorithms to unstructured document collections is to create a vector space model, alternatively known as a bagofwords. Power iteration clustering pic largescale extension to spectral clustering key idea. Pic replaces the eigen decomposition of the similarity matrix required by spectral clustering by a small number of matrixvector multiplications, which leads to a. Spectral clustering is computationally expensive unless the graph is sparse and the similarity matrix can be efficiently constructed. Parallel clustering algorithm for largescale biological data. Elsevier parallel computing parallel computing 21 1995 25 parallel algorithms for hierarchical clustering dark f. In his current role, as a software engineer, he works with research teams to deliver high quality software.
We present a simple and scalable graph clustering method called power iteration clustering pic. Gilder is an associate professor of computer science at the college of saint rose. There are currently very few unsupervised machine learning algorithms available for use with large data set. To view the clustering results generated by cluster 3.
Introduction clustering or grouping document collections into conceptually meaningful clusters is a wellstudied problem. Points are distributed within a disk in the hyperbolic plane, a pair of points is connected if their hyperbolic distance is below a threshold. Power iteration clustering algorithm pic replaces the eigen values with pseudo eigen vector. Parallel clustering algorithms for image processing on multi. This chapter is devoted to building clusterstructured massively parallel processors. Cluster object provides access to a cluster, which controls the job queue, and distributes tasks to workers for execution. Machine learning uses these data to detect patterns and adjust program. The following table provides additional information on the members of this template class. Assign each vectorintroduction clustering is a critical step in image processing and recognition. Our parallel clustering algorithm runs on the cluster computers environment. Learn to connect power supplies in parallel for higher. It computes a pseudoeigenvector of the normalized affinity matrix of the graph via power iteration and. He has extensive experience in highperformance computing, parallel architectures and parallelization techniques. Introduction clustering is the unsupervised classi.
The main aim of this paper is to design a scalable machine learning algorithm to scaleup and speedup clustering algorithm without losing its accuracy. Power iteration clustering pic 6 is an algorithm that clusters data, using the power. Clustering task is, however, computationally expensive as many of the algorithms require iterative or recursive procedures and most of reallife data is high dimensional. Parallel clustering algorithms for image processing on. Software engineer in the software and analytics organization at ge research, in niskayuna, ny. It performs clustering by embedding data points in a. An efficient implementation of chronic inflation based power. Add power iteration clustering algorithm with gaussian similarity function. Wise has over 18 years of experience with ge and has indepth experience designing and developing solutions for ge businesses with focus on innovative technology solutions for the industrial internet. Java treeview is not part of the open source clustering software. Power iteration clustering pic power iteration clustering pic is a scalable and efficient algorithm for clustering vertices of a graph given pairwise similarities as edge properties, described in lin and cohen, power iteration clustering.
Normalize the calculated similarity matrix of the graph, wd1 a. Let x 1, x 2, x n be the n data points and p be the number of processors. In section 1, contains introduction, section 2, main method power iteration clustering, section 3 contains existing system parallel power iteration clustering. These two properties, small average distance and local clustering, are very di. A parallel clustering algorithm for power big data analysis. Bowden wise is a computer scientist with over 14 years with the ge global research. Clustering, section 3 contains existing system parallel power iteration clustering.
Though pic is fast and scalable it causes inter collision problem when dealing with larger datasets. Power iteration clustering pic is a newly developed clustering algorithm. Parallel power iteration clustering for big data using. Compared to traditional clustering algorithms, pic is simple, fast and relatively scalable.
Graph clustering algorithms are commonly used in the telecom industry for this purpose, and can be applied to data center management and operation. Pic finds a very lowdimensional embedding of a dataset using truncated power iteration on a normalized pairwise similarity matrix of the data. Pic replaces the eigen decomposition of the similarity matrix required by spectral clustering by a small number of matrixvector multiplications, which leads to a great reduction in the computational complexities. Introduction the progressive incorporation of data collection and communication abilities into consumer electronics is gradually transforming our society. Reported utilization of the computers by their algorithm is 50%. Keywordsclustering methods, hardware design, kmeans, parallel architectures, hardware folding i. Enhancing mapreduce framework for bigdata with hierarchical. Parallel power iteration clustering for big data request pdf.
Netcdf a set of software libraries and selfdescribing, machineindependent data formats that support the creation, access, and sharing of arrayoriented scientific data. Wise has over 18 years of experience with ge and has indepth experience designing and developing solutions for ge businesses with focus on innovative. While mcl and tribemcl have been used extensively in clustering sequence similarity and other types of information, at a large scale, mcl becomes very demanding in terms of computational and memory requirements. The first one is the runtime of constructing the similarity matrix, and the second is the runtime of the clustering algorithm. This paper presents a new clustering algorithm, the gpic, a graphics processing unit gpu accelerated algorithm for power iteration. Scale up centerbased data clustering algorithms by. To solve the optimal eigen value problem, in this paper we proposes an inflated power iteration clustering algorithm. Both requires data matrix and similarity matrix to be fitting into the processors memory that is infeasible for very larger datasets. Power iteration clustering carnegie mellon school of. This technique is simple, scalable, easily parallelized, and quite wellsuited to very large datasets. In b through d, the value of each component of vt is plotted against its index.
Problem description clustering is the task of assigning a set of objects into groups called clusters so that the objects in the same cluster are more similar in some sense or another to each other than to those in other clusters. Journal of parallel and distributed computing, july 8, 2012. There are several different forms of parallel computing. Parallel computing is a type of computation in which many calculations or the execution of processes are carried out simultaneously. Animation that visualizes the power iteration algorithm on a 2x2 matrix. Implementation of p pic algorithm in map reduce to handle. It has a better ability of handling larger datasets. To optimize graph based power iteration for big data based.
Parallel netcdf an io library that supports data access to netcdf files in parallel. Cuda kmeans clustering by serban giuroiu, a student at uc berkeley. One unit must operate in constant voltage cv mode and the others in constant current cc mode. There are hierarchical kmeans 7 parallel clustering 8, hierarchical mst 9, hierarchical meanshift 10, and hierarchical dbscan 11, to name a few. The smallworld phenomenon can be interpreted as a power law distribution combined with a local clustering e. Their algorithm requires broadcasting the data set over the internet in each iteration, which causes a lot of network traffic and overhead. We have implemented power iteration clustering pic in mllib, a simple and scalable graph clustering method described in lin and cohen, power iteration clustering. Cudabased parallelization of power iteration clustering for large. An efficient implementation of chronic inflation based.
Algorithm design for ppic in mapreduce the algorithm discussed describes the procedure for implementing the parallel power iteration clustering using the hadoop mapreduce framework. Hardware implementation of the kmeans clustering algorithm. This section attempts to give an overview of cluster parallel processing using linux. In addition to kmeans, bisecting kmeans and gaussian mixture, mllib provides implementations of three other clustering algorithms, power iteration clustering, latent dirichlet allocation and. Parallel computing on a cluster matlab answers matlab. Large problems can often be divided into smaller ones, which can then be solved at the same time. Parallel clustering algorithm for largescale biological. Aug 08, 2014 the main steps of power iteration clustering algorithm are described in fig 2.
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